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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … Genomes Project, which aims to provide a reference genome for each of the fungal families. Researchers had access to …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … Dr. Ben Cole and Dr. Axel Visel led to being co-advised by Dr. Tanja Woyke and additionally mentored by members of …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … that support open data practices, development of standards and processes for data quality and sharing, and …
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence to snip — … work? The project was a multi-institutional effort led by then-graduate student Cory Schwartz and his advisor Ian …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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From Competition to Cooperation
… lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were … to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … mutant library in Chlamy, as the alga is colloquially known by researchers. A missing gene from this mutant library … user facilities work with the researchers to assess their needs and help them with their methodologies, experiments …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … the Methodology section as “those that rank in the top 1% by citations for papers published and cited between … together virus experts, representatives from the Genomic Standards Consortium (GSC), and the International Committee …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
Arctic permafrost. But to see what they’re doing, he first needs their DNA.   …
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River microbiomes from around the world: Kelly Wrighton
Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … through a single research proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One … KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth System …
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