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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … to curate and cultivate what is still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … and maintaining the health of these systems, these communities remain understudied. Through the JGI’s Community … work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office of Biological and …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … of the paper, called it “a call to action for many communities” including educational partners, citizen … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User … visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often …
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
… Adapting the graduate research experience amidst a global …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … The JGI is inviting researchers using the U.S. Culture Collection …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … Roger, when we were both postdocs at Scripps Institution of Oceanography. Roger was splitting his time between Bill …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … large amounts of genomic data from a variety of microbial communities, the model learns to recognize patterns, … its demand for substantial operational resources.  ”The metagenomics data generated by the JGI are very …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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