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Microbiome Data Science: Understanding Our Microbial Planet
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Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum
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Exabiome: Advancing Microbial Science through Exascale Computing
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same … at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling … atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… catalyzed by microbial communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP … as well; at any given time, many species in a community may be in ‘low power mode’, where they do very little.  SIP … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Doubling Down on Known Protein Families
Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … is working on soil environments or the human body — they may take some of those families and try to functionally …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional … Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… associated with viruses, while the genomes of large viruses may be only 10 times larger. And yet, while they are found … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … available but also complementary single-cell sorting and sequencing of viruses together with their unicellular …
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DOE JGI Metagenome Workflow
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Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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John Vogel
… his postdoctoral studies at the Carnegie Institution for Science where he studied the molecular basis of a plant … hybridum and its diploid progenitors. Nature Communications 11 (1), 1-16  https://doi.org/10.1038/s41467-020-17302-5 … al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal …
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