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Simon Roux
… focused around developing foundational knowledge of viral diversity and virus-host interactions in microbial systems. … … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell 185, … 39, 578-585. Roux et al., 2019. Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. … factors that control how genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The … the binding location for most transcription factors in a species,” O’Malley said. “It’s a unique capability; no one …
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The More the Merrier: Making the Case for Plant Pan-genomes
… in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas … genomically the whole complex of progenitors and descendant species and, consequently, the evolution of polyploidy.” … Mya) with a maternal  B. stacei parent. The analysis also revealed that these two  B. hybridum types don’t interbreed. …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… that when salinity is reduced in its environment, this alga reveals a remarkable ability to adapt to stress and rapid … ice surface handles such fluctuations. P. psychrophila is a species of Pelagophyceae, a microalga shown to thrive in … They are also the primary producers in the marine food web, forming the base of the food chain and providing energy …
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Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes
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Rex Malmstrom
Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional activities of specific microbial … Volland et al. 2022.   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound … Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 (1), 4881 …
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Global distribution of a wild alga revealed by targeted metagenomics
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Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
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Comparative metagenomics reveals impact of contaminants on groundwater microbiomes
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Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
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Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi)
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A parts list for fungal cellulosomes revealed by comparative genomics
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