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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … collected soil samples from four sites: Aspurz, Spain; Champenoux, France; Lamborn, Sweden; Montmorency, Canada. These …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … opportunity to collaborate and network with talented scientists and staff at the JGI.” Listed below are the …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … These advanced computing capabilities meet the needs of scientists out in the field, and developing such tools has … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub … microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … published in 2014 by a team led by University of Pretoria scientists with help from researchers at the DOE Joint …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Green Algae Reveal One mRNA Encodes Many Proteins
… to dig in a little deeper, and realized what was really happening,” recalled Sean Gallaher, a research scientist in … and first author of the article. The research team included scientists at the University of California (UC), Berkeley, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … or does their broad distribution indicate multiple, independent origin events? Do the cytotypes react differently in …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … Genomics call for proposals . The proposal call is open year-round, but proposals submitted by July 30 will be … A:  When a proposal is submitted to the JGI, JGI scientists will go over the whole proposal for the technical …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, HudsonAlpha Faculty …
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Ben Bowen
… Rübel, O., Keasling, J., Northen, T., & Bowen, B. (2017). OpenMSI Arrayed Analysis Toolkit: analyzing spatially defined … Louie, K., Bethel, E., Northen, T., & Bowen, B. (2013). OpenMSI: a high-performance web-based platform for mass …
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