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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … alternative sigma factors to initiate transcription of gene sets associated with functions like stress responses and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single snowflake … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus mining. After a couple of …
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A Grass Model to Help Improve Giant Miscanthus
Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to novel traits.  M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets … Researchers at CABBI and elsewhere are following up on these discoveries to develop new varieties of  …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of sorghum plants are … root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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A Grass Model to Help Improve Giant Miscanthus
Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets … Researchers at CABBI and elsewhere are following up on these discoveries to develop new varieties of …
Learn more
Getting to the Bottom of Fungal Functions Across Earth’s Forests
… forest soils hold keys to tree health and carbon storage — skills that matter increasingly as the climate warms. … interactions to untangle. Fungi work in cooperation to support a forest, and species vary across Earth’s … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop … Portals Coordinate data analysis tool tutorials, as needed Upon completion of all work associated with your proposal, …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … Ronan O’Malley , who leads the Sequencing Technologies Group. In an article published November 25, 2021 in Nature … This can provide insights into how they orchestrate sets of genes to execute similar functions. It can also …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … the effective management and strategic objectives for the JGI’s data science, informatics and information technology …
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A Community Resource for Secondary Metabolite Researchers
… environment. Many secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the last … Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a semi-automated, …
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