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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … These studies could pinpoint populations, but they said little about which species were doing what.  To understand …
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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three … biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a …
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Busting the Unbreakable Lignin
… plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of … is well-established: Across all life forms and with little exception, organisms have figured out how to create … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number … And yet, while they are found everywhere, comparatively little is known about viruses, much less those considered …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He … the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he … Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences … National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. …
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Viruses Reprogram Cells into Different Virocells
… be a duck. But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a … carbon in the ocean could fix less carbon when infected. Little is known about virus-infected microbial cells that … U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential … carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, …
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