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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … technologies for  biofuels and other bioproducts. Finally, understanding how brown rust disease resistance …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … Yet this plant, native to China and now disseminated around the globe, often as a rootstock for  Citrus , appeals … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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High-Throughput Functional Genomics for Energy Production
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Chapter 4 Functional genomics of Chlamydomonas reinhardtii
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … — I’m always glad to pay it forward,” said Wint, now in her final year of PhD research at UC Merced. She plans to …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory … One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with …
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on projects to develop functional genomic technologies and to understand genome …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … of the world: Crystal Geyser, Utah, USA, and Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … cell sorting and non-standard molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic …
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