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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… foundational science, creating opportunities for the global research community. The U.S. Department of Energy (DOE) … has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …
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iPHoP: A Matchmaker for Phages and their Hosts
… hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever … into the same workflow, then uses a machine-learning model to give its integrated prediction a confidence score. … of Energy, Office of Science, Biological and Environmental Research, Early Career Research Program awarded under UC-DOE …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the … previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of … of genomic, quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X and …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in … in exactly what area I will ultimately pursue a career, a model like JGI is certainly of interest. What is/has been …
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Forming Scientific Connections and Building Community
… JGI brings and being able to be a part of groundbreaking research is very sentimental to me.” Mentors: Crysten … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having been able …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  (LBNL … the University of Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the … on November 6–7 focused on improving cultivation and genomic coverage. Experts in cultivation and environmental …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   … be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of … User Facilities, is a legally binding contract.   All User researchers must have their home/employing institution sign … the new User Agreement will replace the active version. For researchers with a Howard Hughes Medical Institution (HHMI) …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than … will assist researchers in moving toward functional genomics studies to learn more about the inner workings of …
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JGI@25: The Little Alga That Could
… for studying photosynthesis and cell motility. It’s also a model for studying lipid production in other algae that may … at the lab relegated the experimental scientist to library research for three months. While reading up on … together for what was then called a JGI Jamboree, a sort of genomic hackathon to annotate a genome. (Hear more from on …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the … on a few species like Arabidopsis or rice as homology models for computational function predictions and also due …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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