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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz established a single-cell-based …
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Open Frameworks Training the Next Generation of Scientists
… generation workforce through funding opportunities managed by the Office of Workforce Development for Teachers and … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many available to …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Participation (CAMP) program, a statewide initiative funded by the National Science Foundation (NSF) that supports … shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate intern): Currently …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… spatially-resolved transcriptomics studies to date. This paper  is the cover article for the April 2024 issue  of  … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Karen Serrano said. She is first author of this paper and a graduate researcher at the Joint BioEnergy …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Back in 2011, JGI-supported researchers published a paper in the journal Science. It detailed how they’d used … scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Capabilities Webinar inviting researchers to submit white papers to the Community Science Program’s  Functional … proposal call is open year-round, but proposals submitted by July 30 will be included in the next review. “So webinars … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … harnessing algae for bioenergy and the greater bioeconomy. By bringing together publicly available genomic data on …
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JGI announces 2023 CSP Functional Genomics awardees
… Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six researchers …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Harkess of Auburn University started as a small-scale white paper focused on duckweed through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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