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Analysis of the genetic diversity of the soybean rust pathogen Phakopsora pachyrhizi reveals two major evolutionary lineages
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI announces 2025 Functional Genomics awardees
… Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] Paul Scesa, Kathleen Scott, Tiffany … Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who … Through our  CSP Functional Genomics call , we look for projects that will leverage the JGI's DNA synthesis and …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a free, open source data science platform … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize …
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Emiley Eloe-Fadrosh
… ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy.
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A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes … really fun working with the both of you. I have been so impressed at the questions that you have. Because asking …
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