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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, … enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, … that even enzymes that evolved separately for billions of years have some common signatures of muli-substrate …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an email. “Therefore, …
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A Community Resource for Secondary Metabolite Researchers
… expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made … of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. … SMC is the most comprehensive BGC database …
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Tracing the Evolution of Shiitake Mushrooms
Lentinula genus diverged roughly 28 million years ago, when the largest mammal ever, Paraceratherium, … enzymes, oxidoreductases, and cytochrome P450s. This includes the species L. raphanica, which has been … … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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When “The Blob” Made It Hotter Under the Water
United States began forming in Alaska. Over the next two years it slowly spread, raising water temperatures by a few … of the U.S. Department of Energy under Contract DE-AC02- 05CH11231, the G. Unger Vetlesen and Ambrose Monell …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria that act … … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Ancient Algae Reveal Secrets of Plant Evolution
… that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ … US National Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical Research …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science … V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Agency , methane gas warms the atmosphere as much as 25 times more quickly than even carbon dioxide. The EPA … a JGI Community Science Program proposal that started six years earlier, researchers put together what they called the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to stress. The Impact Despite constituting less than 5% of land on Earth, peatlands store approximately one-third … peat from these boggy wetlands produces an estimated 5% of annual greenhouse gas emissions. Understanding how … and filtering water. Peat formed there over thousands of years sequesters more carbon than all other vegetation types …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 … has “significantly advanced our understanding of 1 billion years of evolution in Kingdom Fungi — from phylogenetic …
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Marine Microbe Contains Multitudes
… to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 … Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected …
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