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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Patterns and drivers of fungal community depth stratification in Sphagnum peat
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Host genotype controls ecological change in the leaf fungal microbiome
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… will target sustainable energy solutions, focusing on lignocellulosic thermophiles and polymer degradation.  “We are … of these projects are large in scale and involve multiple collaborators, bringing together diverse expertise to … The other seven researchers are returning, including one previous New Investigator awardee.  The CSP Annual call …
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Evolution of an Expanded Sex-Determining Locus in Volvox
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the … Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key components of Gene … rich annotations and metadata. Nucleic acids research Jan 2024 Chen IA, Markowitz V, Szeto E, Palaniappan K, and Chu K. …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Ian Blaby
… carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal … editing by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom … from Chlamydomonas reinhardtii reveals continuous cell and metabolic differentiation. The Plant Cell . 27: 10, …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… the University of California, Davis. “The work with JGI was one of the first things we actually started doing when … CSP call or through the  “Facilities Integrating Collaborations for User Science” (FICUS) initiative .  Q: … scale the request size, being permitted to request up to 1.5 megabases (MB) of a synthesis, compared to 0.5 MB for a …
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Fungal genomes mining to discover novel sterol esterases and lipases as catalysts
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