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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … with this purification step, and Baumgart continued and expanded on the work known as biotin DAP-seq after she left …
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Biodesign
… convert sequence into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … discovery and maximize the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the … such time that JGI indicates the data should be publicly released. Over the next several weeks, the JGI will be in …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase …
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
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Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains … to define the current shape of the microbial tree of life by filling in genomic information for thousands of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … life’s processes.  Traditionally, mapping this intricate network of regulatory “switches” in plants at a large scale … models. Updates to DAP-seq build upon the previous version in several key ways. A research biologist by …
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Leveraging single-cell genomics to expand the fungal tree of life
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