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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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Toward a Data Infrastructure for the Plant Cell Atlas.
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AmiGO: online access to ontology and annotation data
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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user meeting. The UEC also acts as a liaison to the user community and the broader scientific community … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is …
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … Primary Template-Directed Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA …
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … first author of the study, the lysate produced BDO at higher productivity rates than were noted inside the cell. … genome in order to create lysates with altered metabolic performance, Alper noted. “This was really an unknown …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … microbial enzymes, which could have a plethora of potential applications to industrial processes. Summary JGI … the researchers also hooked and were able to reconstruct a high-quality draft co-assembled genome for a new genus level …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … harness them as molecular tools for research and industry applications. Summary In their recently published Nature … used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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