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When “The Blob” Made It Hotter Under the Water
The Blob, researchers developed a preliminary model of how marine microbial communities are affected by warming … studies could help researchers improve predictive models on how climate change may impact marine microbes and by …
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A One-Stop Shop for Analyzing Algal Genomes
… components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … experiments; study DNA methylation, which gives clues to how an organism may tune gene expression; and investigate … Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. …
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A One-Stop Shop for Analyzing Algal Genomes
… components that make it useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced … experiments; study DNA methylation, which gives clues to how an organism may tune gene expression; and investigate … Knowledgebase (KBase) also allows researchers to study how metabolites flow through and transform in algae. …
Learn more
Accelerating Metagenomics Discoveries with Deep Learning
… difficult to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … community. Other work presented at the workshop included how to use deep learning to predict protein function (Héctor …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … host — often, a fellow archaeal microbe. Understanding how these hosts and hitchhikers coexist is key for … efficiently and convert it to usable organic compounds. However, no microbe works alone. Archaea, bacteria, and …
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Pinning Down a Piece of Photosynthesis
… cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in changing … they turn carbon dioxide and water into oxygen and sugars. How photosynthesis works, though, is much harder to pin … in vitro and  in vivo experiments, they looked at how this domain binds iron, and how that relates to the way  …
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Uncovering Novel Genomes from Earth’s Microbiomes
… that time. “Looking across the tree of life, it’s striking how many uncultivated lineages are only represented by … field [metabolic modeling], but they might be interested in how biochemistry impacts what they work on. The genomics … finding ways to utilize the catalog in his own research on how microbes respond to climate change. “With this dataset I …
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Supercharging SIP in the Fungal Hyphosphere
… land plants, which means they offer a lot of insights into how plant materials can be broken down for things like biomass and  biofuels . However, AMF and the microbial communities they inhabit are … and mitigating greenhouse gas emissions, and understanding how to improve soil health can help mitigate the effects of …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… you have to perform, the kind of tasks you’re given and how this is going. Tahirah Williams : I hope to gain … was just really, really exciting for me and learning how to use the capabilities of the supercomputers here to … something that has been really exciting to be able to learn how to do. Ravikiran Madichetty : The best part of interning …
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Computationally Classifying Fungal Lifestyles
… researchers developed an algorithm that “taught” a computer how to classify 101 representative genomes of … of  Dothideomycetes could provide more insights into how these fungi have adapted to stress and host specificity, … prediction of lifestyle based on 6 gene clusters showed a >95 % accuracy in correctly predicting plant …
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Training the Next Generation of Talent
… of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward compounds produced by the … the best to use,” he says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to … the first round of feedback from the participants to learn how to improve in future years. Knowing that we can …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… it lose less water in a hot, dry environment. Figuring out how plants evolved to deal with hot and dry conditions could … and I kicked off our conversation with a quick recap of how plants, in general, work. KAROLINA:  We all know plants …
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