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Metabolomics
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Genome organization and botanical diversity
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Unveiling plasmid diversity in nature
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… aren’t interested in waiting decades to develop new crops. One example is an ongoing collaborative effort to improve … customize the crop for additional end products. The genetic diversity within this set of plants, each with a … ago with a proposal from UT-Austin’s Tom Juenger, a longtime JGI collaborator and a senior author on this study. The …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced … related 16S rRNA genes, but these genes mask the striking diversity of their genomic capabilities. According to Boeuf, …
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A Sorghum Pangenome Opens More Doors to Discovery
… and more — however, a single reference genome shows only one slice of the adaptation possible for this plant. In other lines around the world, much more genetic diversity exists.  Now, researchers have brought many … wanted to build a resource that demonstrates DNA sequence diversity, gene repertoire, and the phenotypic diversity …
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Scaling Up Existing Skill Sets
… experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year PhD student in Quantitative … before. Seeing the breadth of interesting work being done at the JGI has really motivated me to think outside of … something totally new during my Ph.D. What is/has been one of your favorite things about your JGI internship?  …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… the University of California, Davis. “The work with JGI was one of the first things we actually started doing when … first. Prospective users are always welcome to contact one of us about possible proposals if it’s different from what is on offer and to see if it can be done.  After the technical review, proposals with feasibility …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in … giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated with … datasets becoming available but also complementary single-cell sorting and sequencing of viruses together with their …
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Introducing New Members of the JGI User Executive Committee
… He also wants to assist JGI in extending its activity-based cell sorting pipelines to further the link between cellular … noted, “I would also like to offer my insights in promoting diversity, equity and inclusion (DEI) in STEM disciplines to … of fungal endophytes across land plants and lichens, mentioned her interest in guiding JGI policies and practices …
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Webinar: SIP technologies at EMSL and JGI
… sample to start with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? A: It … sequencing and assembly. Like others, our turnaround time has been impacted by the pandemic. 3. Q: What … 6. Q:How would field applications of the rhizoboxes mentioned in Jim Moran’s presentation work?   A: As long as we …
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JGI@25: Building a Better Bean
… identifying genes related to disease-resistance, flowering time, nitrogen metabolism, seed weight and domestication. … Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to genetically manipulate. One important improvement to the bean spawned from this …
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