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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … level genomic variation. The genome and metagenome data are available through JGI’s Integrated Microbial …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. … mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … the bioeconomy. Summary In the past decade, many breeding tools for eucalyptus have relied on the E. grandis reference …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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Integrating Microbial Community Data Into an Ecosystem‐Scale Model to Predict Litter Decomposition in the Face of Climate Change
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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