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Chordate evolution and the three-phylum system
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IMG ER: a system for microbial genome annotation expert review and curation
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … wanted to be true to my roots, and always work with marine systems because that’s just where my innate curiosity and … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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Special Initiatives & Programs
… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be involved …
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PR-PR: Cross-Platform Laboratory Automation System
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