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… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …

… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …

Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … same route. “It was really amazing how the quality of the data improved thanks to that massive amount of new genomes,” …

D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … energy.gov/science/office-science . … Cotton on Phytozome Data Portal …

… interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in …

… remembering to document his code. At JGI, he develops tools for viral discovery and analysis, with a particular …

… by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant to J. …

… is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the Society … of solvent-producing Clostridium species. Scientific Data. 11 Hahnke, R. L. et al. 2022. Expanding the Genomic … Wood-Charlson EM et al. 2020. The National Microbiome Data Collaborative: enabling microbiome science. Nat Rev …

… variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for … No. 1011101 to E.S. and J.M.L. … Fungus Genome on MycoCosm data portal … Alga Genome on PhycoCosm data portal … Datasets … Datasets …

… advances in sequencing technologies and bioinformatic tools have helped decode the genomes of tens of thousands of … of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … was identified from microbial and metagenome sequence data sets generated from a handful of hot springs, including …

… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …

I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my … a STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a …