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Supercharging SIP in the Fungal Hyphosphere
… it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or water. Later, their … which microorganisms used the labeled substance and which microbes did not. This is normally an arduous wet lab … them. In this case, scientists identified a wide variety of microbes, including both bacteria and archaea, actively …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… of course, the cells of other organisms. As they infect microbes like bacteria, algae and protists, all kinds of … and in your data, and they’re probably influencing the microbes there,” said Simon Roux , the Viral Genomics Group … do anything with a microbiome — you know, target specific microbes or change the behavior of this bacteria — most …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, and viruses vastly outnumber the microbes. Advances in sequencing technologies and … that infect not just crops, animals and humans, but also microbes whose presence or absence can impact the planet’s …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… users can leverage to create a more complete picture of how microbes control useful chemistry in other organisms.  … the power of combining multiple omics methods to decode how microbes control chemical production. These efforts support …  Researchers studying Streptomyces species or related microbes can work with the JGI to apply the same integrated …
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Year in Review: JGI’s 2018 Progress Report Available Now
… Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI …
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SIPs with Standards
… microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… life adapted to extreme conditions studied through the Antarctic Lake project. The model’s training also included …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… ecologist and JGI user Trina McMahon has been sampling microbes at Lake Mendota, which borders the University of … Mendota data set, illuminating not just the highly-abundant microbes we expect to see, but also low-abundance … Mendota time series is an investment that pays dividends. Microbes are at the core of many environmental processes, …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to … has identified the major metabolic roles of constituent microbes, publishing their findings in the  Proceedings of …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… has a number of applications, including pain relief. The microbes in cone snails may be involved in venom activity, … has started, known as the Initiative for Venom Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced …
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