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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications. The planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … environments, actinobacteria play roles in both the carbon and nitrogen cycles, break down plant mass (think …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science … This is episode 4 of Natural Prodcast, our interview with Dr Nancy Keller from the University of Wisconsin, recorded at the Society for Industrial Microbiology …
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JGI on the 2020 Highly Cited Researchers List
… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples … Program, and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
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Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … strides in generating genome sequences for members of the microbial world through bulk community sequencing … of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural communities. This type …
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A One-Stop Shop for Analyzing Algal Genomes
… are important organisms. They play key roles in global carbon cycling, are sources of natural products, and have potential … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … could allow them to manipulate microbiomes to facilitate microbial solutions to challenging environmental problems, …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … More importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are … the gene regulatory networks as they responded to available carbon sources, which ranged from simple sugars to plant …
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