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… a fluorescent marker into  E. coli , allowing the team to model the competition dynamics between different synthetic  … plants. When these engineered bacteria were used with the model plant  Arabidopsis,  the plants grew better than when … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …

… the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also supported by the …

… is on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail …

… make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model species. The following year saw the beginnings of …

… Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome … Researcher (Cross-field), 2020 LBNL Early Career LDRD, 2018 Senior Editor: Microbiology Resource Announcements …

… costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance between two … taxa (Andrew Tritt of CRD and, independently, Ying Zhang of the University of Rhode Island), and to bin …

… of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … microbiomes. Tringe was also Kaze’s mentor during her 2018 internship, in which she explored anthropogenic impacts …

… very excited to start working with this years’ crop of CSP recipients, over half of which are first-time PIs on a … and we look forward to facilitating their success. “ The CSP Annual Call is focused on large-scale genomic science … had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …

… has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science. 2018 Nov 16;362(6416):839-842. doi: 10.1126/science.aav4294. …

… work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant …