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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … related to understanding how the interactions between viruses and their host microbes impact the regulation of global …
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JGI at the AGU Fall Meeting
… December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … successful proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and … Hall on how the Facilities Integrating Collaborations for User Science (FICUS) program allows scientists access to …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be … takes him to a portion of the Arkansas River that’s just a little west of Fort Collins, near a city called … which is how the EPA, it’s one of the indices they use for stream health, they look at how many invertebrate …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … had not been a primary investigator on any proposals previously accepted through JGI’s calls. Nearly 200 Terabases of … expected to be generated for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP …
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Taking Stock of the Known and Unknown Microbial Space
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of the current state of microbial genomic biodiversity. Using publicly available genome sequence data generated over … Nikos Kyrpides and Natalia Ivanova conducted a census of publicly available bacterial and archaeal sequences. …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as secondary, data-downloading users — have …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( Actinomycetota ), a group of …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … halving the total reagent cost. While Biotin DAP-seq can be used by itself, it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows researchers to conduct …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution and transition of … every family of fungi. In the following guest piece, JGI user Ying Chang in the Spatafora lab describes the effort …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … proposals come from investigators who have not previously been a principal investigator (PI) on an approved JGI proposal. Approved proposals make use of JGI’s breadth of capabilities while also highlighting …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … scientists have identified at least 15 zealexins, they suspect there are even more to find. Zealexins are produced … a dozen enzymes. But researchers have now revealed that just a handful of enzymes are needed to transform zealexins …
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