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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … Metagenomic discovery of biomass-degrading genes and genomes from cow rumen . Science 331, 463-7. Visel A , Zhu …
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An Automated Tool for Assessing Virus Data Quality
Through advances in sequencing technologies and computational approaches, more and more virus sequences are being … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … and published in the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the JGI’s … impact. Her lab has sequenced four additional green algal genomes using Chlamy as a reference for functional …
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint … researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha outline the …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the … information. According to Lawrence, this summer project aligned with his computational background and …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research (2012CB114504). The work …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria …
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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that …
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