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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and … yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  published … a crop. The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August … data that was formerly at Phytozome v12? All genome data released in Phytozome v12 (and version 13 and, in fact, all …
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DOE JGI Interns Share Their Summer Experiences
… worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … soon be contained within the JGI’s Secondary Metabolism Collaboratory (SMC) portal ( smc.jgi.lbl.gov ). Unique Value …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it … long history of dynamic evolution and rapid changes in both genome content and structure following a genome duplication … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of Science of …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… partnering with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sustainable soil management practices. Read the full release from Anuvia  here .     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … assembly of two Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and … lot of rain.  Previous analysis of the E. grandis reference genome, an international effort by a team that included …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … In their approved proposal, Frederick Colwell of Oregon State University and colleagues are interested in the … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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