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Ben Bowen
… and bioinformatics facilitates impactful scientific discoveries, supporting the DOE’s Biological and … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. … 59(1), 33–42. Bowen, B., & Northen, T. (2010). Dealing with the unknown: metabolomics and metabolite atlases. …
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Taking Stock of the Known and Unknown Microbial Space
… to curate and cultivate what is still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out … the number of cultured isolates. If you’re interested in learning more, fill out  this survey . …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… poorly-studied algal and viral genomes, and integrate with key DOE Office of Biological and Environmental Research … Bushley of the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how … Queens University aims a multi-omics approach toward generating “with unprecedented precision” the gene …
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DAP-seq Drives Robust Mapping of Gene Regulation
… limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … provides a robust community dataset of improved quality; deep insights identify the most important binding sites by … More specifically, it’s enabled several scientific discoveries that are key to understanding how to engineer …
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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ClaMS: A Classifier for Metagenomic Sequences
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Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018
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Green genes from blue greens: challenges and solutions to unlocking the potential of cyanobacteria in drug discovery
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … bacteria instead go through a boom and bust cycle aligned with light availability. A long-running time-series study … the natural world. The Impact From the polar regions to the deep ocean, cold environments occupy more space on Earth …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … Q: How many PacBio metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( … the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per library. …
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