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David Goodstein
KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of … PhD in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference … acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks regions of interest and gene copy …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding … Community Science Program proposal call are due in Spring 2022. Byline: Massie S. Ballon       … The U.S. Department …
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its … annotation and analysis. The JGI and KBase seek to enable users to seamlessly access and analyze data on scales … JGI and KBase are designated DOE Office of Science Public Reusable Research (PuRe) Data Resources are authoritative …
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DOE JGI Metagenome Workflow
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Frederik Schulz
… leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and … elements with geNomad. Nature Biotechnology . Schulz et al. 2022. Giant virus biology and diversity in the era of … 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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Picking Up Threads of Cotton Genomics
… of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , and  G. darwinii are the others. All of these … another study co-author at Texas A&M University. “This report establishes new opportunities in multiple basic and … is one such example.” Jones noted that he talks to growers about Cotton Inc.’s long-term investment in crop research. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… their schedules were filled with trainings that they later reported were incredibly valuable to their careers going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy …
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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the data provided. In this proof of concept test, the team reported that the algorithm was over 95% successful at …
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Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
… at King Abdullah University of Science and Technology (KAUST) in Saudi Arabia. …
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… peer through the waters and clouds of insects hover just above. Described as a “river of grass” that stretches … to apply the latest molecular techniques to learn more about the microbial communities in the Arthur R. Marshall … microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome …
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