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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … Summary As the planet has changed, so have plants. Curious about their ability to adapt to changing environments, … and in flowering plant lineages.   With the information about  Marchantia -specific innovations and adaptations, …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome … insights into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term … The DOE has been similarly invested in environmental management, contributing to bioremediation efforts for …
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Better Living Through Bioenergy
… Pseudomonas putida to break down biomass and help bring about a more sustainable, biobased economy. They conduct research at the … Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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Silver age of GOLD introduces new features
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … repositories, as well as project data entered by external users. The Impact One of the significant challenges in … in centigrade, and more.  The four level project organization system implemented in GOLD consist of: Studies, …
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Styling for Safety: PPE, It’s the JGI Way
… is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE or Personal … is worn to minimize exposure to hazards that can cause workplace injuries and illnesses. These injuries and … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has … from private industry. I really liked the fairly flat organizational structure, and found everyone to be welcoming …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to a pathogen. This ‘“alien’” organism — one previously unseen — is, in fact, a microscopic water mold, … ramorum (pronounced: Fy-TOFF-thor-uh ra-MOR-um) the genus in Latin translates to “plant destroyer” and it has … scores of nurseries across the nation, elevating concerns about the pathogen to an all-time high. California …
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JGIota: The Algae Nicknamed ‘Chlamy’
… This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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Partnerships: Myco-Ed
… and publicly available datasets encompassing a wide array of fungal genomes, along with curated metadata to enable … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or … is required to perform computational analyses. The Mycocosm user interface is designed for use by mycologists and …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … .  The latest article, published January 27, is about engineering plants and their microbiomes for more … and domestication of yeast , a model eukaryote. The wide array of topics comes from the authors’ interests, says Woyke. …
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JGI@25: From Life at the Extremes to Editing Genomes
… ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and … Planetary Science and Environmental Science, Policy, and Management.” So begins a passage from Doudna’s book about her meeting with Banfield. (Banfield’s recounting of …
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