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When “The Blob” Made It Hotter Under the Water
… from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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Picking Up Threads of Cotton Genomics
… of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , and  G. darwinii are the others. All of these … is one such example.” Jones noted that he talks to growers about Cotton Inc.’s long-term investment in crop research. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… down potential biomass sources in ways we are only just beginning to understand. A better understanding of rumen … around the world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work led by AgResearch collaborators …
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has … from private industry. I really liked the fairly flat organizational structure, and found everyone to be welcoming …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and …
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FICUS-NERSC/KBASE
Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … for proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase …
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Microbial Genomics & Metagenomics (MGM) Workshop
… (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes … wealth of public microbiome sequence data and enables the user to analyze these data with existing bioinformatic …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in … JGI on a proposal using this approach through the Emerging Technologies Opportunity Program (ETOP). Following that …
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The JGI announces 2024 awardees for our Community Science Program annual call
… proposals this year,” noted Tanja Woyke, who heads JGI’s User Programs. “These PIs have proposed research that … outcomes.” The annual CSP call is focused on large-scale genomic science projects relevant to the DOE’s Office of … nutrient cycling, and biogeochemistry. You can learn more about this call, as well as smaller-scale calls including …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes …
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