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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
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Busting the Unbreakable Lignin
… (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research … University). The work (proposal: 10.46936/10.25585/60000889) conducted by the U.S. Department of Energy Joint …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… is remarkably simple with only 7,500 genes, compared to 17,000 in the model alga Chlamydomonas . The genome is also compact at 22 megabases versus 120 MB in Chlamydomonas . With fewer redundant pathways and … under U.S. Department of Energy Contract No. DE-AC02-05CH11231. MAD was supported, in part, by the NIH T32 Genetics …
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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … bioenergy and bioengineering applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… machines. You’d go find the cash converter box, feed it a $1, $5 or $10 bill and receive a set amount of tokens, commensurate in … increased efficiency, the model can process these tokens 150 times faster.  Leveraging Large Data Sets for Smarter AI …
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Annual Genomics of Energy & Environment Meeting
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The Expanding Universe of Methane Metabolisms in Archaea
… metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new … Marker genes for diverse methane metabolisms Of the 10 MAGs reconstructed in the study, five were from …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the Department of Energy (DOE) colleagues. “At that time (1986) 98% of the human genome was thought to be junk DNA, so … Health that this effort would prove invaluable. By the mid-1990s, the sequencing efforts expanded beyond LANL to … genetics. Drell held the role until he retired in 2018. “While I never said this out loud,” Drell said, speaking …
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Gut Fungi: Unexpected Source of Novel Chemicals
… californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department … Research and operated under Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also …
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Virus Discoveries that Keep Getting Bigger
… large virions (700 nm in diameter) to much smaller virions (120 nm in diameter). Across the phylum  Nucleocytoviricota , … of Science User Facility, under contract no. DE-AC02–05CH11231. C.A. received funding from the European Research …
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