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JGI-KBase Panel at SACNAS
… contribution they make, whether as part of a course or internship, and before ever publishing a research article. … National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their … research experience and how students were able to use these experiences to get credit for their scientific contributions …
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FICUS-NERSC/KBASE
… jointly support these missions, and to expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …
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NeLLi — Symposium on New Lineages of Life
Hatzenpichler, Montana State University Maggie Sogin, UC Merced   …
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An Integrated Dataset to Understand Ecosystem Interaction
… nitrogen and carbon, as well as improving the tree’s production as a biofuel feedstock. Public accessibility to the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The work builds off a longstanding partnership between the JGI and Oak Ridge National Laboratory, dating back to the …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal … California State University campuses for biotechnology education as part of a course-based undergraduate resource … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in … features and functions. Making connections between the structures and functions of the genes encoded in the genome … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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Metagenome Program
… and metabolic potential, with implications for energy production, environmental sustainability, and many other … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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Tracing the Evolution of Shiitake Mushrooms
… for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in the global  … enzymes, oxidoreductases, and cytochrome P450s. This includes the species L. raphanica, which has been … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these … in the soil samples of these varied biomes; the forests share only about 20% of their fungal species. To make useful …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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2023 Progress Report
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Jeremy Schmutz
… the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led the … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … kingdom. Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid …
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