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… the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. … his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign latitude …

Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral … year, the JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated …

… in is actually seeing whether we could go into the genomes and predict what the natural product might actually … specifically looking at non-ribosomal peptides, looking in genomes for ones that are cyclic. And so we do this-- we've … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …

… their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The …

… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. …

… in every corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that … to home in on precise biosynthetic enzymes elicited by fungal infection. They analyzed differences among mutant …

… for anaerobic fungi . Eventually, it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many different …

… technologies have led to an abundance of microbial genomes becoming available to the global research … a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually … Data Science group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” …

… are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection cycle. “We’re not … affecting the microbe’s own eukaryote host. As their small genomes can be easily manipulated through genetic … size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an inovirus. But if …

Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great meeting … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …