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… she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited … the first time. A 2020 Nature Genetics paper describing the genomes of the five major cotton lineages. Grimwood was also …

… in is actually seeing whether we could go into the genomes and predict what the natural product might actually … specifically looking at non-ribosomal peptides, looking in genomes for ones that are cyclic. And so we do this-- we've … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …

… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. … (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and hitchhiker genomes for …

… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …

… professor at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He has worked closely with both the Fungal & Algal Program and the Microbial Program over the …

… assembly of two Corymbia citriodora subspecies variegata genomes allowed researchers to study the conservation and … (JBEI), the JGI worked on resequencing several eucalypt genomes to establish the feasibility of genome wide …

… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree or … Q(uestion): Can you please explain again how did you pick genomes to be on the genomes portal? For the taxa I work on, …

… metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …

… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … and genome version you’re after.  You can even grab genomes based on which version of Phytozome (e.g., 9, 10, …

… Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …