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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March … at Lawrence Berkeley National Laboratory, is located in one of those counties. The shelter-in-place order has since been … In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on the personal and …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was … power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses …
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Styling for Safety: PPE, It’s the JGI Way
… Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the lab. To address this issue, we … to provide our colleagues with a visual representation of JGI PPE requirements. When working in the lab, it is … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new … striving for sustainability in lab spaces as well as offices. These efforts dovetail into sustainability … looking at the overall greenhouse gas impacts from all of our operations,” said Brie Fulton, program manager for  …
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JGI announces first round of 2023 New Investigator awardees
… is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel … under our Community Science Program.  Below find a list of the first 10 researchers accepted for 2023. Proposals are …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … For the portion of the work conducted by the Joint Genome Institute and the Joint BioEnergy Institute, support …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … varieties able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI Hosts GPU Hackathon in May
… processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … and Mark Soghomonian share what it was like to take on one of these genomes.  …
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