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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake … In this episode: a look at the supercomputing that stitches together large datasets with the assembler program …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil … This episode, researchers take a look at what happens to that storage when a rainforest hits a drought. Tag along with …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss … into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and Benjamin …
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A Plant Root Atlas for Tracking Developmental Trajectories
User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … are hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research … which is also focused on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel …
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Alabama A&M Interns Access An Abundance of Knowledge
… and Alabama A&M University piloted an internship program to bring students to the JGI for research training experience. Enabled by the … and graduate student LaMonika Dent worked with JGI mentors Yi Zhai and John Vogel on researching the effects of …
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Pinning Down a Piece of Photosynthesis
… a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … light microscope, and fickle, often hiding their function from even the most determined scientist.  Recent work in  … their groupings.  One pivotal effort along these lines came from UC Berkeley professor and longtime JGI collaborator …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October … that the process of moving 250 people and their equipment from 4 single-story buildings to a new 4-story building 20 …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … shrub willow have been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene … the study’s international team, which included scientists from Oak Ridge National Laboratory and the U.S. Department …
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Benjamin Cole
… studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was … Dr. Cole is focusing on how individual plant cells respond to their biotic environment using emerging single-cell … characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) …
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Ben Bowen
State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State University, Bioengineering & … Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for Exceptional Achievement 2012 UC Berkeley, … and Development Program Awardee 2005-2009: NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate …
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