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Three Join the JGI User Executive Committee
… of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go … influence biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or … has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and brings …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he explained. “In …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the … Berkeley, which is also affiliated with the Innovative Genomics Institute. The Impact The ability to accurately …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance … “JGI is one of the largest producers of environmental genomics data and has a strong reputation in the community,” …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … other bacteria and microbial processes that support PCE biodegradation. The results demonstrate that it takes a … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 …
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Extracting the Secrets of Secondary Metabolites
… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE technologies. … edits affect functionality.  CRAGE allows for the transplanting of these BGCs from one organism into an alternate … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to … collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … This work received funding by the Alfred P. Sloan foundation (grant number …
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