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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 … The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley … science, energy conversion and water treatment as well as microbial ecology with a focus on metabolism and ecosystem … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are …
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Simon Roux
… development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … drivers of virus-host dynamics in soil microbial communities. …
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Leveraging single-cell genomics to expand the fungal tree of life
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Giant viruses with an expanded complement of translation system components
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Exploring and expanding the natural chemical space of bacterial diterpenes
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … of Maryland School of Medicine and her graduate work in microbial oceanography at Scripps Institution of … to learn more about the program's areas of focus, major initiatives and more.  …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… at work around the globe Keynote Talk Title : “Wild Microbial Ecology” Microbial ecologist  Bruce Hungate , of … organisms can do. And we need the field’s context to see why it matters.” As his career progressed, Hungate has … these amazing technologies that the JGI has to identify and sequence who’s making what, that the context at a microscale …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from …
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Soil virus offers insight into maintaining microorganisms
… to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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