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Len Pennacchio
… DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… by researchers at two U.S. Department of Energy national user facilities – the DOE Joint Genome Institute and the … for $50-200, generating a potential profit of $1.4 million annually.  The team is working on developing new microbial … strains that can synthesize other bio-based materials. For information about licensing the patented osteoyeast for …
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Mapping the Earth’s Hidden Fungal Kingdom
… Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling this enormous … and analytical. How can the research community systematically sample an ancient, hyperdiverse kingdom while … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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JGI@25: Using Team Science to Build Communities Around Data
… Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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JGI on the 2021 Highly Cited Researchers List
… associate climate adaptations with switchgrass biology. The information could be useful toward the DOE’s interest in … JGI staff who mentored students this past year, through programs including the JGI-UC Merced Genomics Internship …
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Emiley Eloe-Fadrosh
… environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore Foundation as … National Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome …
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… recently, these long-reads have been applied to DNA methylation analysis as well as improving metagenome assemblies. … protocols for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) …
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Tracing the Evolution of Shiitake Mushrooms
… sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … JGI (https://ror.org/04xm1d337), a DOE Office of Science User Facility, was supported by the Office of Science of the …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Trent Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about the …
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