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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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How Filamentous Fungi Sense Food
… these fungi detect which complex chains are available; this information triggers pathways to determine which enzymes … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work was enabled in part through JGI’s Community Science Program through a proposal akin to the Encyclopedia of DNA …
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Digging into Microbial Ecosystems Deep Underground
… these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … the JGI and the Environmental Molecular Science Laboratory (EMSL) at Pacific Northwest National Laboratory. Letters of …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Microbiome Data Science Team
Science  363(6425):350-352 Harrington LB, et al (2018) Programmed DNA destruction by miniature CRISPR-Cas14 … Methods  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information about a single amplified genome (MISAG) and a …
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Len Pennacchio
… … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data … Additional duties of this Deputy include interacting with users seeking to exploit new genomic technologies and … User science. … Complete Publications Genomic Technologies Program Defining the vast landscape of gene regulatory …
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Better Genome Editing for Bioenergy
… at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing microbial … is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to identify which …
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2024 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants …
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Understanding Wildfire Recovery, Starting in Soil
… and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … for User Science (FICUS) initiative . In this program, researchers leverage the capabilities of more than …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to collect samples from across the country to … not only how researchers can successfully partner with DOE user facilities and resources on such large-scale multi-omic …
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