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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … . Epub. Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell . …
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Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs
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JGI@25: Fueling Investigation into Methane-Making Microbes
Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using … and test a ribonuclease capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … labs, as well as Pett-Ridge’s group, will assemble input materials, with eight or nine different teams then …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … metagenomics and single cell genomics have afforded JGI users and the larger research community a means to access …
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How to Target a Microbial Needle within a Community Haystack
… strides in generating genome sequences for members of the microbial world through bulk community sequencing … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Supercharging SIP in the Fungal Hyphosphere
… automated aspects of a commonly-used process for studying microbial communities, with results published in the  … which means they offer a lot of insights into how plant materials can be broken down for things like biomass and  … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… from UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … the Advanced Light Source, future collaborative research projects were also intensively discussed. The Berkeley …
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Crysten Blaby-Haas
… joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the … Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley lab. She earned her PhD in … AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, …
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Decoding Yellowstone’s Microbial Mats
Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …
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