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Year in Review: JGI’s 2018 Progress Report Available Now
… notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake …
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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Webinar: MycoCosm Tutorial
… the organism’s ecology, mostly based on literature and user community inputs. We also have the potential to create … even to use the results in the papers A: Grigoriev et al (2014) MycoCosm portal: gearing up for 1000 fungal genomes. … Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also contact us for …
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Making a Lichen Together
… Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … and nitrogen cycling. Summary To shed light on lichen, an international team led by Daniele Armaleo, a biologist at … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed …
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Sequencing Submission Requirements for DNA Synthesis
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST … deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer …
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A Model System for Perennial Grasses
… The U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the culmination of nearly a decade of … near-complete genomes of P. hallii var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and …
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Jeremy Schmutz
… 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … Nature Plants 3:17054. Schmutz, J, & McClean P et al. 2014. A reference genome for common bean and genome-wide … model plant Setaria. Nature Biotechnology 30: 555-561. The International Brachypodium Initiative. Genome sequencing and …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… synthetic versions. This project has turned out to be an international collaboration, with some artistic endeavors …
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Fungus Fuels Tree Growth
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program in … is managed by UT-Battelle, LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Toward More Efficient Artificial Photosynthesis
… them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director of … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility (contract no. DE-AC02-05CH11231) with T.J.E. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … available on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of JGI eligible to … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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