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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the evolutionary …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic … But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … As part of efforts to characterize global microbial diversity with an aim to improve predictive ecosystems …
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Waiting to Respire
… to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … and Saganbacteria that diverged from the bacterial tree before Cyanobacteria and its contemporaries. … researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … strides in generating genome sequences for members of the microbial world through bulk community sequencing …
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Long-Term Persistence of Three Microbial Wildfire Biomarkers in Forest Soils
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Substrate-restricted methanogenesis and limited volatile organic compound degradation in highly diverse and heterogeneous municipal landfill microbial communities
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Long-term warming modulates diversity, vertical structuring of microbial communities, and sulfate reduction in coastal Baltic Sea sediments
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to … Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the … a PPE Campaign to provide our colleagues with a visual representation of JGI PPE requirements. When working in the …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The … the same place they often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part … genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new …
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