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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or … by these high quality reference genome sequences could help researchers better understand related genes in more complex plants that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science … All of the data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… in New Mexico via leakage from a local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides … Science Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  … Partial support was provided by the National Center for Research Resources (NCRR) (5P20RR016480-12) and …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
Jorge Arroyo , director of UC Merced’s Undergraduate Research Opportunity Center, echoed similar sentiments for the undergraduate … of the summer to “confident in themselves and their research” during their final presentations and beyond. …
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Enlarging Windows into Understanding Gene Functions
Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the transcription factors … bind quickly and efficiently in the genome by adding tagged transcription factors to a genomic DNA library. “It’s … a principal investigator at the Szeged Biological Research Center in Hungary. His approved proposal through the JGI’s …
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High-Quality Draft Genome Sequence of the Opitutaceae Bacterium Strain TAV1, a Symbiont of the Wood-Feeding Termite Reticulitermes flavipes
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JGI Portals
… … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access … comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, …
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JGI@25: The Little Alga That Could
… at the lab relegated the experimental scientist to library research for three months. While reading up on … not. When the lab reopened, Merchant would go on to work on research that identified signaling pathways in … the Chlamydomonas genome in the early-2000s. She and other researchers came together for what was then called a JGI …
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A Collaboration to Improve Plant Genome Annotations Across Species
As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than … transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In fact, …
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Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS …
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