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Bacteria and Fungi Divvy Up the Work in Forest Floor
… detailed database on the denizens in the soil. While large protein databases, like UniProt, exist, are not specific … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) … work was supported by the Czech Science Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group is responsible for developing and … the JGI as an Instrumentation Engineer where he added structure and process to the group by developing SOPs for … BS in BioEngineering, University of California, Berkeley …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … Episode Transcript … This is Episode 6 of Natural Prodcast, our conversation with Marc Chevrette, a …
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Computational protein design enables a novel one-carbon assimilation pathway
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Ribosome-inactivation by a class of widely distributed C-tail anchored membrane proteins
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… A wide array of invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, … to be wildly divergent among sample sites. “Many of these sequences are no more similar than random,” Holmes said. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … identifying viruses across many thousands of genomes and metagenomes, called geNomad (watch Antonio Camargo present …
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