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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), played a critical role in … led by Gmitter and JGI’s Daniel Rokhsar, published over the last half-dozen years, on the ancestral origins of  Citrus …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … Science user facility located at Lawrence Berkeley National Laboratory, have collaborated with global researchers on …
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Science Programs
The JGI’s Science Programs offer support to users and their … lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … along with water content. The class had to work collaboratively and creatively to come up with a sense of what … of integral biomarkers:  mcrA ,  nifH , and  dsrB .  Lastly, for this project the students calculated the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) describe a computational pipeline …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … hydrogenotrophic (most common); methylotrophic; and, acetoclastic. All three pathways require the gene cluster for … (MAGs) were recovered, most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest … with identifying the right ingredients. Researchers collaborating across multiple institutions have sequenced and …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software … project. But every part of this project depends on lakewater samples — so this episode is a look at how researchers …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … A senior scientist at Lawrence Berkeley National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes …
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