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Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … is estimated to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the … a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … better understand the genetic structural diversity of the genus. Understanding all the gene variants and how they …
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SPRUCE-ing Up Science
… one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … researcher at the Oak Ridge National Laboratory (ORNL), based in Oak Ridge, Tennessee. Recently, Lawrence, in … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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Fishing for Novel Cellulose Degraders
… by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sorting to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team … by protein in vitro expression and mass spectrometry-based enzyme activity assay. The work was  reported in  The …
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Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional approaches. …
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Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms
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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
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Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss).
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