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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship program between … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … which remains unknown and uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the … cell. Several years later, the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … all major evolutionary lineages in the land plant tree of life. Ultimately, the resulting comparative … Nature Communications on Ceratopteris richardii marks the first published manuscript of a genome sequence generated …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … nearly 2,000 genomes to construct kingdom-wide evolutionary trees and overlay them with genomic features. This allows …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published complete draft genome … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … conditions. While scientists around the world were busy sequencing the human genome, an arms race was being waged. … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to …
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Dan Rokhsar
… and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … Publications … Selected Publications …
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