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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … he decided to apply. After a few rounds of virtual interviews, Lawrence joined the SPRUCE team, which aims to … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … This allows for more accurate and detailed comparative genomic analyses.   The Impact There are 900 species of … market demand for eucalyptus in various industries, having genomic resources to develop molecular breeding tools has …
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Building Sphagnum Genomic Resources
… Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of … These research results, building on the availability of genomic information from two distinct environments, …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of … to experimental manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting, to be held in …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s … of the diversity present in R570 but shows the genomic effects of breeding practices that transformed …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … Simon Roux, a JGI research scientist in the  Environmental Genomics group . Training the Search Tool Inoviruses are …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome …
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