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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass
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Fungus Fuels Tree Growth
… always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … expression when the fungus is present. The Impact Black cottonwood, or poplar, ( Populus trichocarpa ) is the … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Annual Meeting 2027
… this page as further details become available. Sign up for our newsletter to receive updates.    …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Yeast strains engineered for the biochemical conversion of glucose to value-added … Program at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of a product in just eight hours that growing cells take three days to make, which is a really exciting jump in the …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … aims to create pipelines, tools and other standardized data resources that the global research community can access and … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … while minimizing its demand for substantial operational resources.  ”The metagenomics data generated by the JGI are …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … a lichen’s genomes and transcriptomes could help inform efforts at bioengineering symbiotic microbial consortia for …
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the organizing committees for the … BERAC response to the charge on unified data, and the ASCR Future Computing Methodologies workshops. In 2018, Dr. …
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Plant Microbial Interactions Group
… experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … Selected Publications … For further details, please reach out to …
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