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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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Erratum: Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … work also used resources of the  National Energy Research Scientific Computing Center (NERSC) , another DOE Office of …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic acids research Jan 2024 … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … Regional Development Fund, and the Plant–Microbe Interfaces Scientific Focus Area in the Genomic Science Program, the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Igor Grigoriev
… at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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